plot.seq

list output from <code><a rd-options="" href="/link/SummarySeq?package=sequoia&version=2.0.7" data-mini-rdoc="sequoia::SummarySeq">SummarySeq</a></code>

SeqSum

dataframe with at least id, dam and sire in columns 1-3,
respectively. If columns with parental LLRs and/or Mendelian errors are
present, these will be plotted as well.

Pedigree

character vector with panel(s) to plot. Choose from 'all',
'G.parents', 'D.parents', 'sibships', 'LLR', 'OH'.

Panels

visualise the numbers of assigned parents, sibship sizes, and parental LLRs

internal

Fast multi-generational pedigree inference from incomplete data on
hundreds of SNPs, including parentage assignment and sibship clustering.
See Huisman (2017) (<DOI:10.1111/1755-0998.12665>, citation('sequoia')) for
more information.

Jisca Huisman

sequoia

Pedigree Inference from SNPs

plot.seq function

list output from <code><a rd-options='' href='SummarySeq'>SummarySeq</a></code>

plot.seq: Plot summary overview of sequoia output

Description

Usage

Arguments