CalcRped

Morph pedigree into a kinship2 compatible format and use
 <code>kinship</code> to calculate kinship coefficients;
 relatedness = 2*kinship.

Multi-generational pedigree inference from incomplete data on
hundreds of SNPs, including parentage assignment and sibship clustering.
See Huisman (2017) (<DOI:10.1111/1755-0998.12665>) for more information.

Jisca Huisman

sequoia

Pedigree Inference from SNPs

CalcRped function

<dl><dt>Pedigree</dt>
<dd>dataframe with columns id-dam-sire.</dd>
<dt>OUT</dt>
<dd>desired output format, 'M' for matrix or 'DF' for dataframe with
columns IID1 - IID2 - R.ped.</dd></dl>

Arguments

Calculate Pedigree Relatedness — CalcRped

<dl>

<dt>Pedigree</dt>
<dd>dataframe with columns id-dam-sire.</dd>


<dt>OUT</dt>
<dd>desired output format, 'M' for matrix or 'DF' for dataframe with
columns IID1 - IID2 - R.ped.</dd>

</dl>

CalcRped: Calculate Pedigree Relatedness

Description

Usage

Value

Arguments