sequoia (version 2.3.5)

DyadCompare: Compare Dyads

Description

Count the number of half and full sibling pairs correctly and incorrectly assigned. DEPRECATED - PLEASE USE ComparePairs

Usage

DyadCompare(Ped1 = NULL, Ped2 = NULL, na1 = c(NA, "0"))

Arguments

Ped1

original pedigree, dataframe with 3 columns: id-dam-sire.

Ped2

second (inferred) pedigree.

na1

the value for missing parents in Ped1.

Value

A 3x3 table with the number of pairs assigned as full siblings (FS), half siblings (HS) or unrelated (U, including otherwise related) in the two pedigrees, with the classification in Ped1 on rows and that in Ped2 in columns.

See Also

ComparePairs which supersedes this function; PedCompare

Examples

# NOT RUN {
data(Ped_HSg5, SimGeno_example, LH_HSg5, package="sequoia")
SeqOUT <- sequoia(GenoM = SimGeno_example, LifeHistData = LH_HSg5,
                  Module="par", quiet=TRUE, Plot=FALSE)
DyadCompare(Ped1=Ped_HSg5, Ped2=SeqOUT$Pedigree)
# }
# NOT RUN {
# }