Call main Fortran part of sequoia, and convert its output to a list with dataframes.
SeqParSib(ParSib, FortPARAM, GenoM, LhIN, AgePriors, Parents, DumPfx, quiet)either "par" to call parentage assignment, or "sib" to call the rest of the algorithm.
matrix with genotype data, size nInd x nSnp.
life history data: ID - sex - birth year.
matrix with agepriors, size Specs["nAgeClasses"] by 8.
matrix with rownumbers of assigned parents, size nInd by 2.
suppress messages.
a named vector with parameter values, as generated by
ParamToSpecs.
3x3 matrix with genotyping error probabilities; rows=actual, columns=observed.
A list with
the pedigree
Info on dummies (not included if parentage-only)
Total log-likelihood per iteration
Ageprior including columns for grandparental and avuncular relationships
Includes sex and birthyear estimate inferred from the pedigree for individuals with initially unknown sex and/or birthyear
For a detailed description of the output see sequoia.