sequoia (version 3.0.3)

ReOrderDums: Re-order likelihood vector

Description

change the order for dummy individuals so that the results are easily comparable with genotyped individuals

Usage

ReOrderDums(LLM, Complex = "full")

Value

a matrix with similar dimensions, but changed column order:

.

GP \(\rightarrow\) PO (GP of sibship = parent of dummy)

.

FA \(\rightarrow\) FS

.

HA \(\rightarrow\) HS

.

FS \(\rightarrow\) FA (FS of sibs=offspring of dummy, NOT parent)

.

HS \(\rightarrow\) HA

.

U \(\rightarrow\) U

.

PO \(\rightarrow\) DUP (only if 'DUP' already among column names)

Arguments

LLM

a matrix with log10-likelihoods; individuals in rows.