PlotPropAssigned

For any pedigree, plot the proportion of individuals that has
a genotyped, dummy, observed, or no dam/sire assigned.

Multi-generational pedigree inference from incomplete data on
hundreds of SNPs, including parentage assignment and sibship clustering.
See Huisman (2017) (<DOI:10.1111/1755-0998.12665>) for more information.

Jisca Huisman

sequoia

Pedigree Inference from SNPs

PlotPropAssigned function

<dl><dt>Pedigree</dt>
<dd>dataframe where the first 3 columns are id, dam, sire.</dd>
<dt>DumPrefix</dt>
<dd>character vector with prefixes for dummy dams (mothers) and
sires (fathers), used to distinguish between dummies and non-dummies.</dd>
<dt>SNPd</dt>
<dd>character vector with ids of genotyped individuals
(e.g. rownames of genotype matrix).</dd>
<dt>...</dt>
<dd>further arguments passed to <code><a href="/link/barplot?package=sequoia&version=3.1.3" data-mini-rdoc="sequoia::barplot">barplot</a></code></dd></dl>

Arguments

Plot proportion of individuals that has a parent assigned — PlotPropAssigned

<dl>

<dt>Pedigree</dt>
<dd>dataframe where the first 3 columns are id, dam, sire.</dd>


<dt>DumPrefix</dt>
<dd>character vector with prefixes for dummy dams (mothers) and
sires (fathers), used to distinguish between dummies and non-dummies.</dd>


<dt>SNPd</dt>
<dd>character vector with ids of genotyped individuals
(e.g. rownames of genotype matrix).</dd>


<dt>...</dt>
<dd>further arguments passed to <code><a href='https://rdrr.io/r/graphics/barplot.html'>barplot</a></code></dd>

</dl>

PlotPropAssigned: Plot proportion of individuals that has a parent assigned

Description

Usage

Value

Arguments

Details

Examples