load_pop_data

Load a cross-sectional antibody survey data set

Translates antibody levels measured in cross-sectional
population samples into estimates of the frequency with which
seroconversions (infections) occur in the sampled populations.
Replaces the previous `seroincidence` package.

Kristina Lai

serocalculator

Estimating Infection Rates from Serological Data

Peter Teunis

Chris Orwa

Kristen Aiemjoy

Douglas Ezra Morrison

load_pop_data function

<dl><dt>file_path</dt>
<dd>path to an RDS file containing a cross-sectional antibody
survey data set, stored as a <code><a href="/link/data.frame()?package=serocalculator&version=1.3.0" data-mini-rdoc="serocalculator::data.frame()">data.frame()</a></code> or <a href="https://tibble.tidyverse.org/reference/tbl_df-class.html">tibble::tbl_df</a></dd>
<dt>...</dt>
<dd>Arguments passed on to <code>as_pop_data</code><dl>
 <dt><code>data</code></dt>
<dd>a <code><a href="/link/data.frame()?package=serocalculator&version=1.3.0" data-mini-rdoc="serocalculator::data.frame()">data.frame()</a></code> or <a href="https://tibble.tidyverse.org/reference/tbl_df-class.html">tibble::tbl_df</a></dd></dl></dd> <dt><code>antigen_isos</code></dt>
<dd><code><a href="/link/character()?package=serocalculator&version=1.3.0" data-mini-rdoc="serocalculator::character()">character()</a></code>
vector of antigen isotypes to be used in analyses</dd> <dt><code>age</code></dt>
<dd>a <code><a href="/link/character()?package=serocalculator&version=1.3.0" data-mini-rdoc="serocalculator::character()">character()</a></code> identifying the age column</dd> <dt><code>id</code></dt>
<dd>a <code><a href="/link/character()?package=serocalculator&version=1.3.0" data-mini-rdoc="serocalculator::character()">character()</a></code> identifying the id column</dd> <dt><code>value</code></dt>
<dd>a <code><a href="/link/character()?package=serocalculator&version=1.3.0" data-mini-rdoc="serocalculator::character()">character()</a></code> identifying the value column</dd> <dt><code>standardize</code></dt>
<dd>a <code><a href="/link/logical()?package=serocalculator&version=1.3.0" data-mini-rdoc="serocalculator::logical()">logical()</a></code> to determine standardization of columns</dd> 
</dl>

Arguments

Load a cross-sectional antibody survey data set — load_pop_data

<dl>

<dt>file_path</dt>
<dd>path to an RDS file containing a cross-sectional antibody
survey data set, stored as a <code><a href='https://rdrr.io/r/base/data.frame.html'>data.frame()</a></code> or <a href='https://tibble.tidyverse.org/reference/tbl_df-class.html'>tibble::tbl_df</a></dd>


<dt>...</dt>
<dd>Arguments passed on to <code>as_pop_data</code><dl>
 <dt><code>data</code></dt>
<dd>a <code><a href='https://rdrr.io/r/base/data.frame.html'>data.frame()</a></code> or <a href='https://tibble.tidyverse.org/reference/tbl_df-class.html'>tibble::tbl_df</a></dd>

 <dt><code>antigen_isos</code></dt>
<dd><code><a href='https://rdrr.io/r/base/character.html'>character()</a></code>
vector of antigen isotypes to be used in analyses</dd>

 <dt><code>age</code></dt>
<dd>a <code><a href='https://rdrr.io/r/base/character.html'>character()</a></code> identifying the age column</dd>

 <dt><code>id</code></dt>
<dd>a <code><a href='https://rdrr.io/r/base/character.html'>character()</a></code> identifying the id column</dd>

 <dt><code>value</code></dt>
<dd>a <code><a href='https://rdrr.io/r/base/character.html'>character()</a></code> identifying the value column</dd>

 <dt><code>standardize</code></dt>
<dd>a <code><a href='https://rdrr.io/r/base/logical.html'>logical()</a></code> to determine standardization of columns</dd>

 
</dl></dd>

</dl>

load_pop_data: Load a cross-sectional antibody survey data set

Description

Usage

Value

Arguments

Examples