typhoid_curves_nostrat_100

A subset of data from the SEES study, for examples and testing.

datasets

Translates antibody levels measured in cross-sectional
population samples into estimates of the frequency with which
seroconversions (infections) occur in the sampled populations.
Replaces the previous `seroincidence` package.

Kristina Lai

serocalculator

Estimating Infection Rates from Serological Data

Peter Teunis

Chris Orwa

Kristen Aiemjoy

Douglas Ezra Morrison

typhoid_curves_nostrat_100 function

<div class="section" id="typhoid-curves-nostrat-">
<h3><code>typhoid_curves_nostrat_100</code></h3>
A <code>curve_params</code> object (from <code>as_curve_params()</code>) with 500 rows and 7
columns:<dl>
<dt>antigen_iso</dt>
<dd>which antigen and isotype are being measured
(data is in long format)</dd><dt>iter</dt>
<dd>MCMC iteration</dd><dt>y0</dt>
<dd>Antibody concentration at t = 0 (start of active infection)</dd><dt>y1</dt>
<dd>Antibody concentration at t = <code>t1</code> (end of active infection)</dd><dt>t1</dt>
<dd>Duration of active infection</dd><dt>alpha</dt>
<dd>Antibody decay rate coefficient</dd><dt>r</dt>
<dd>Antibody decay rate exponent parameter</dd>
</dl></div>

Format

Small example of antibody response curve parameters for typhoid — typhoid_curves_nostrat_100

<div class='section' id='typhoid-curves-nostrat-'>
<h3><code>typhoid_curves_nostrat_100</code></h3>


A <code>curve_params</code> object (from <code>as_curve_params()</code>) with 500 rows and 7
columns:<dl>
<dt>antigen_iso</dt>
<dd>which antigen and isotype are being measured
(data is in long format)</dd>

<dt>iter</dt>
<dd>MCMC iteration</dd>

<dt>y0</dt>
<dd>Antibody concentration at t = 0 (start of active infection)</dd>

<dt>y1</dt>
<dd>Antibody concentration at t = <code>t1</code> (end of active infection)</dd>

<dt>t1</dt>
<dd>Duration of active infection</dd>

<dt>alpha</dt>
<dd>Antibody decay rate coefficient</dd>

<dt>r</dt>
<dd>Antibody decay rate exponent parameter</dd>


</dl>

</div>

typhoid_curves_nostrat_100: Small example of antibody response curve parameters for typhoid

Description

Usage

Arguments

Format

`typhoid_curves_nostrat_100`