get_seroprev_counts_by_bin

Generate seropositivity counts by bin given the probability and sample size
per age group bin

internal

Estimating the force of infection from time varying, age varying, or constant
serocatalytic models from population based seroprevalence studies using a Bayesian framework,
including data simulation functions enabling the generation of serological surveys based on this
models. This tool also provides a flexible prior specification syntax for the force of infection
and the seroreversion rate, as well as methods to assess model convergence and comparison
criteria along with useful visualisation functions.

Zulma M. Cucunubá

serofoi

Bayesian Estimation of the Force of Infection from Serological
Data

Nicolás T. Domínguez

Ben Lambert

Pierre Nouvellet

Geraldine Gómez

Jaime A. Pavlich-Mariscal

Hugo Gruson

David Santiago Quevedo

Miguel Gámez

Sumali Bajaj

Everlyn Kamau

Richard Creswell

International Development Research Center (IDRC) 

Pontificia Universidad Javeriana 

get_seroprev_counts_by_bin function

<dl><dt>prob_seroprev_by_age</dt>
<dd>Probability of seropositivity by age</dd>
<dt>sample_size_by_age_random</dt>
<dd>Random sample size by age</dd>
<dt>survey_features</dt>
<dd>A dataframe containing information about the binned
age groups and sample sizes for each.
It should contain columns:<dl>
<dt>age_min</dt>
<dd>Left limits of the age groups to be considered in the
serosurvey</dd></dl></dd><dt>age_max</dt>
<dd>Right limits of the age groups to be considered in the
serosurvey</dd><dt>n_sample</dt>
<dd>Number of samples by age group</dd>
</dl>The resulting age intervals are closed to the left <code>[</code> and
open to the right <code>)</code>.

Arguments

Generate seropositivity counts by bin given the probability and sample size
per age group bin — get_seroprev_counts_by_bin

<dl>

<dt>prob_seroprev_by_age</dt>
<dd>Probability of seropositivity by age</dd>


<dt>sample_size_by_age_random</dt>
<dd>Random sample size by age</dd>


<dt>survey_features</dt>
<dd>A dataframe containing information about the binned
age groups and sample sizes for each.
It should contain columns:<dl>
<dt>age_min</dt>
<dd>Left limits of the age groups to be considered in the
serosurvey</dd>

<dt>age_max</dt>
<dd>Right limits of the age groups to be considered in the
serosurvey</dd>

<dt>n_sample</dt>
<dd>Number of samples by age group</dd>


</dl>The resulting age intervals are closed to the left <code>[</code> and
open to the right <code>)</code>.</dd>

</dl>

Generate seropositivity counts by bin given the probability and sample size
per age group bin

get_seroprev_counts_by_bin: Generate seropositivity counts by bin given the probability and sample size per age group bin

Description

Usage

Arguments