serofoi (version 1.0.3)

plot_summary: Plots model summary

Description

Plots model summary

Usage

plot_summary(
  seromodel,
  serosurvey,
  loo_estimate_digits = 1,
  central_estimate_digits = 2,
  rhat_digits = 2,
  size_text = 11,
  plot_constant = FALSE
)

Value

ggplot object with a summary of the specified model

Arguments

seromodel

stan_fit object obtained from sampling a model with fit_seromodel

serosurvey

survey_year

Year in which the survey took place (only needed to plot time models)

age_min

Floor value of the average between age_min and age_max

age_max

The size of the sample

n_sample

Number of samples for each age group

n_seropositive

Number of positive samples for each age group

loo_estimate_digits

Number of loo estimate digits

central_estimate_digits

Number of central estimate digits

rhat_digits

Number of rhat estimate digits

size_text

Size of text for plotting (base_size in ggplot2)

plot_constant

boolean specifying whether to plot single Force-of-Infection estimate and its corresponding rhat value instead of showing this information in the summary. Only relevant when seromodel@model_name == "constant")

Examples

# \donttest{
data(veev2012)
seromodel <- fit_seromodel(veev2012, iter = 100)
plot_summary(seromodel, veev2012)
# }