set_stan_data_defaults

Set stan data defaults for sampling

Estimating the force of infection from time varying, age varying, or constant
serocatalytic models from population based seroprevalence studies using a Bayesian framework,
including data simulation functions enabling the generation of serological surveys based on this
models. This tool also provides a flexible prior specification syntax for the force of infection
and the seroreversion rate, as well as methods to assess model convergence and comparison
criteria along with useful visualisation functions.

Zulma M. Cucunubá

serofoi

Bayesian Estimation of the Force of Infection from Serological
Data

Nicolás T. Domínguez

Ben Lambert

Pierre Nouvellet

Geraldine Gómez

Jaime A. Pavlich-Mariscal

Hugo Gruson

David Santiago Quevedo

Miguel Gámez

Sumali Bajaj

Everlyn Kamau

Richard Creswell

International Development Research Center (IDRC) 

Pontificia Universidad Javeriana 

set_stan_data_defaults function

<dl><dt>stan_data</dt>
<dd>List to be passed to rstan</dd>
<dt>is_log_foi</dt>
<dd>Boolean to set logarithmic scale in the FoI</dd>
<dt>is_seroreversion</dt>
<dd>Boolean specifying whether to include
seroreversion rate estimation in the model</dd></dl>

Arguments

Set stan data defaults for sampling — set_stan_data_defaults

<dl>

<dt>stan_data</dt>
<dd>List to be passed to rstan</dd>


<dt>is_log_foi</dt>
<dd>Boolean to set logarithmic scale in the FoI</dd>


<dt>is_seroreversion</dt>
<dd>Boolean specifying whether to include
seroreversion rate estimation in the model</dd>

</dl>

Set stan data defaults for sampling

set_stan_data_defaults: Set stan data defaults for sampling

Description

Usage

Value

Arguments