summarise_loo_estimate

Estimating the force of infection from time varying, age varying, or constant
serocatalytic models from population based seroprevalence studies using a Bayesian framework,
including data simulation functions enabling the generation of serological surveys based on this
models. This tool also provides a flexible prior specification syntax for the force of infection
and the seroreversion rate, as well as methods to assess model convergence and comparison
criteria along with useful visualisation functions.

Zulma M. Cucunubá

serofoi

Bayesian Estimation of the Force of Infection from Serological
Data

Nicolás T. Domínguez

Ben Lambert

Pierre Nouvellet

Geraldine Gómez

Jaime A. Pavlich-Mariscal

Hugo Gruson

David Santiago Quevedo

Miguel Gámez

Sumali Bajaj

Everlyn Kamau

Richard Creswell

International Development Research Center (IDRC) 

Pontificia Universidad Javeriana 

summarise_loo_estimate function

<dl><dt>seromodel</dt>
<dd>stan_fit object obtained from sampling a model
with fit_seromodel</dd>
<dt>par_loo_estimate</dt>
<dd>Name of the loo estimate to be extracted.
Available options are:<dl>
<dt><code>"elpd_loo"</code></dt>
<dd>Expected log pointwise predictive density</dd></dl></dd><dt><code>"p_loo"</code></dt>
<dd>Effective number of parameters</dd><dt><code>"looic"</code></dt>
<dd>Leave-one-out cross-validation information criteria</dd>
</dl>For additional information refer to loo.
<dt>loo_estimate_digits</dt>
<dd>Number of loo estimate digits</dd>

Arguments

Extract specified loo estimate — summarise_loo_estimate

<dl>

<dt>seromodel</dt>
<dd>stan_fit object obtained from sampling a model
with fit_seromodel</dd>


<dt>par_loo_estimate</dt>
<dd>Name of the loo estimate to be extracted.
Available options are:<dl>
<dt><code>"elpd_loo"</code></dt>
<dd>Expected log pointwise predictive density</dd>

<dt><code>"p_loo"</code></dt>
<dd>Effective number of parameters</dd>

<dt><code>"looic"</code></dt>
<dd>Leave-one-out cross-validation information criteria</dd>


</dl>For additional information refer to loo.</dd>


<dt>loo_estimate_digits</dt>
<dd>Number of loo estimate digits</dd>

</dl>

Extract specified loo estimate

summarise_loo_estimate: Extract specified loo estimate

Description

Usage

Value

Arguments

Examples