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seroincidence package


Antibody levels measured in a (cross–sectional) population sample can be translated into an estimate of the frequency with which seroconversions (infections) occur in the sampled population. Formulated simply: the presence of many high titres indicates that many subjects likely experienced infection recently, while low titres indicate a low frequency of infections in the sampled population.

The seroincidence calculator script was designed to use the longitudinal response characteristics by means of a set of parameters characterizing the longitudinal response of the selected serum antibodies.

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Version

Install

install.packages('seroincidence')

Monthly Downloads

5

Version

2.0.0

License

GPL-3

Maintainer

Chantal Quinten

Last Published

June 5th, 2018

Functions in seroincidence (2.0.0)

salmonellaSSIParams1

Salmonella SSI Response Parameters Data for Model 1
salmonellaSSIParams4

Salmonella SSI Response Parameters Data for Model 4
getAdditionalData

Get Additional Data
pertussisIgGPTParams4

Pertussis IgG-PT Response Parameters Data for Model 4
pertussisIgGPTParams1

Pertussis IgG-PT Response Parameters Data for Model 1
print.seroincidence

Print Method for Seroincidence Object
pertussisIgGPTParams2

Pertussis IgG-PT Response Parameters Data for Model 2
pertussisIgGPTParams3

Pertussis IgG-PT Response Parameters Data for Model 3
campylobacterSimLowData

Simulated Cross-sectional Data
print.summary.seroincidence

Print Method for Seroincidence Summary Object
estimateSeroincidence

Estimate Seroincidence
campylobacterDelftParams1

Campylobacter Delft Response Parameters Data for Model 1
campylobacterSSIParams2

Campylobacter SSI Response Parameters Data for Model 2
campylobacterSSIParams4

Campylobacter SSI Response Parameters Data for Model 4
salmonellaSSIParams2

Salmonella SSI Response Parameters Data for Model 2
seroincidence

Estimating Infection Rates from Serological Data
campylobacterDelftParams3

Campylobacter Delft Response Parameters Data for Model 3
summary.seroincidence

Summary Method for Seroincidence Object
campylobacterDelftParams4

Campylobacter Delft Response Parameters Data for Model 4
campylobacterSSIParams1

Campylobacter SSI Response Parameters Data for Model 1