est_foi

An easy-to-use and efficient tool to estimate infectious diseases parameters using serological data. Implemented models include SIR models (basic_sir_model(), static_sir_model(), mseir_model(), sir_subpops_model()), parametric models (polynomial_model(), fp_model()), nonparametric models (lp_model()), semiparametric models (penalized_splines_model()), hierarchical models (hierarchical_bayesian_model()).
The package is based on the book "Modeling Infectious Disease Parameters Based on Serological and Social Contact Data: A Modern Statistical Perspective" (Hens, Niel & Shkedy, Ziv & Aerts, Marc & Faes, Christel & Damme, Pierre & Beutels, Philippe., 2013) <doi:10.1007/978-1-4614-4072-7>.

Anh Phan Truong Quynh

serosv

Model Infectious Disease Parameters from Serosurveys

Nguyen Pham Nguyen The

Long Bui Thanh

Tuyen Huynh

Thinh Ong

Marc Choisy

est_foi function

<dl><dt>t</dt>
<dd>- time (in this case age) vector</dd>
<dt>sp</dt>
<dd>- seroprevalence vector</dd></dl>

Arguments

Estimate force of infection — est_foi

<dl>

<dt>t</dt>
<dd>- time (in this case age) vector</dd>


<dt>sp</dt>
<dd>- seroprevalence vector</dd>

</dl>

Estimate force of infection

est_foi: Estimate force of infection

Description

Usage

Value

Arguments