sgof (version 2.0.2)

summary.SGoF: Summary of a SGoF object

Description

Summary of the most important results given by the Conservative SGoF procedure.

Usage

## S3 method for class 'SGoF':
summary(object, \dots)

Arguments

object

A SGoF object.

...

Additional arguments affecting the summary produced.

Value

• Rejections
  The number of effects declared by SGoF.
• FDR
  The estimated false discovery rate.
• Adjusted.pvalues
  Table of adjusted p-values falling under gamma.

encoding

UTF-8

References

Castro Conde I and de Uña Álvarez J (2013). Adjusted p-values for SGoF multitesting method. Discussion Papers in Statistics and Operation Research. Report 13/05. Statistics and OR Department. University of Vigo. https://webs.uvigo.es/depc05/reports/13_05.pdf Dalmasso C, Broet P and Moreau T (2005) A simple procedure for estimating the false discovery rate. Bioinformatics 21:660--668 de Uña Álvarez J (2011). On the statistical properties of SGoF multitesting method. Statistical Applications in Genetics and Molecular Biology, Vol. 10, Iss. 1, Article 18.

See Also

SGoF,plot.SGoF

Examples

p<-runif(387)^2  #387 independent p-values, non-uniform intersection null violated

res<-SGoF(p)
summary(res)   #number of rejected nulls, estimated FDR