shar v1.1

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Species-Habitat Associations

Analyse species-habitat associations in R. Therefore, information about the location of the species is needed and about the environmental conditions. To test for significance habitat associations, one of the two components is randomized. Methods are mainly based on Plotkin et al. (2000) <doi:10.1006/jtbi.2000.2158> and Harms et al. (2001) <doi:10.1111/j.1365-2745.2001.00615.x>.

Functions in shar

Name Description
reconstruct_pattern_hetero reconstruct_pattern_hetero
reconstruct_pattern_cluster reconstruct_pattern_cluster
rcpp_sample rcpp_sample
estimate_pcf_fast estimate_pcf_fast
print.rd_mar print.rd_mar
translate_raster translate_raster
plot_randomized_raster plot_randomized_raster
species_a Species a
torus_trans Torus trans
reconstruct_pattern_homo reconstruct_pattern_homo
species_b Species b
print.rd_pat print.rd_pat
random_walk Random walk
results_habitat_association results_habitat_association
randomize_raster randomize_raster
shar shar
print.rd_ras print.rd_ras
reconstruct_pattern_marks reconstruct_pattern_marks
reconstruction Reconstruction
plot_energy plot_energy
fit_point_process fit_point_process
calculate_energy calculate_energy
extract_points extract_points
plot_randomized_pattern plot_randomized_pattern
create_neighbourhood create_neighbourhood
gamma_test Gamma test
classify_habitats classify_habitats
landscape Example landscape (random cluster neutral landscape model).
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Vignettes of shar

Name
get_started.Rmd
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Details

Type Package
License GPL-3
URL https://r-spatialecology.github.io/shar
BugReports https://github.com/r-spatialecology/shar/issues
RoxygenNote 6.1.1
VignetteBuilder knitr
Encoding UTF-8
LazyData true
LinkingTo Rcpp
NeedsCompilation yes
Packaged 2019-11-15 14:04:26 UTC; Maximilian
Repository CRAN
Date/Publication 2019-11-15 15:20:02 UTC

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