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shar (version 1.1)

Species-Habitat Associations

Description

Analyse species-habitat associations in R. Therefore, information about the location of the species is needed and about the environmental conditions. To test for significance habitat associations, one of the two components is randomized. Methods are mainly based on Plotkin et al. (2000) and Harms et al. (2001) .

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Version

Install

install.packages('shar')

Monthly Downloads

272

Version

1.1

License

GPL-3

Maintainer

Maximillian H.K. Hesselbarth

Last Published

November 15th, 2019

Functions in shar (1.1)

reconstruct_pattern_hetero

reconstruct_pattern_hetero
reconstruct_pattern_cluster

reconstruct_pattern_cluster
rcpp_sample

rcpp_sample
estimate_pcf_fast

estimate_pcf_fast
print.rd_mar

print.rd_mar
translate_raster

translate_raster
plot_randomized_raster

plot_randomized_raster
species_a

Species a
torus_trans

Torus trans
reconstruct_pattern_homo

reconstruct_pattern_homo
species_b

Species b
print.rd_pat

print.rd_pat
random_walk

Random walk
results_habitat_association

results_habitat_association
randomize_raster

randomize_raster
shar

shar
print.rd_ras

print.rd_ras
reconstruct_pattern_marks

reconstruct_pattern_marks
reconstruction

Reconstruction
plot_energy

plot_energy
fit_point_process

fit_point_process
calculate_energy

calculate_energy
extract_points

extract_points
plot_randomized_pattern

plot_randomized_pattern
create_neighbourhood

create_neighbourhood
gamma_test

Gamma test
classify_habitats

classify_habitats
landscape

Example landscape (random cluster neutral landscape model).