shar v1.1
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Species-Habitat Associations
Analyse species-habitat associations in R. Therefore, information about the
location of the species is needed and about the environmental conditions. To test
for significance habitat associations, one of the two components is randomized.
Methods are mainly based on Plotkin et al. (2000) <doi:10.1006/jtbi.2000.2158> and
Harms et al. (2001) <doi:10.1111/j.1365-2745.2001.00615.x>.
Functions in shar
| Name | Description | |
| reconstruct_pattern_hetero | reconstruct_pattern_hetero | |
| reconstruct_pattern_cluster | reconstruct_pattern_cluster | |
| rcpp_sample | rcpp_sample | |
| estimate_pcf_fast | estimate_pcf_fast | |
| print.rd_mar | print.rd_mar | |
| translate_raster | translate_raster | |
| plot_randomized_raster | plot_randomized_raster | |
| species_a | Species a | |
| torus_trans | Torus trans | |
| reconstruct_pattern_homo | reconstruct_pattern_homo | |
| species_b | Species b | |
| print.rd_pat | print.rd_pat | |
| random_walk | Random walk | |
| results_habitat_association | results_habitat_association | |
| randomize_raster | randomize_raster | |
| shar | shar | |
| print.rd_ras | print.rd_ras | |
| reconstruct_pattern_marks | reconstruct_pattern_marks | |
| reconstruction | Reconstruction | |
| plot_energy | plot_energy | |
| fit_point_process | fit_point_process | |
| calculate_energy | calculate_energy | |
| extract_points | extract_points | |
| plot_randomized_pattern | plot_randomized_pattern | |
| create_neighbourhood | create_neighbourhood | |
| gamma_test | Gamma test | |
| classify_habitats | classify_habitats | |
| landscape | Example landscape (random cluster neutral landscape model). | |
| No Results! | ||
Vignettes of shar
| Name | ||
| get_started.Rmd | ||
| No Results! | ||
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Details
| Type | Package |
| License | GPL-3 |
| URL | https://r-spatialecology.github.io/shar |
| BugReports | https://github.com/r-spatialecology/shar/issues |
| RoxygenNote | 6.1.1 |
| VignetteBuilder | knitr |
| Encoding | UTF-8 |
| LazyData | true |
| LinkingTo | Rcpp |
| NeedsCompilation | yes |
| Packaged | 2019-11-15 14:04:26 UTC; Maximilian |
| Repository | CRAN |
| Date/Publication | 2019-11-15 15:20:02 UTC |
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