Boolean parameter specifying if a LOG should be printed
detailing the parameters entered into this function
raw_data
Numeric data frame containing the X- and Y-coordinates
digitized in Adobe Illustrator or another image processing software
image_length
Measured maximum length of the area of the cross
section that is represented in "raw_data"
season_length
Length (in days) of the growth season of the
studied bivalve
Xstep
The step size (dx) in X-direction used to interpolate
coordinates of shell increments
Tstep
The step size (dt) in time (days) used to interpolate
the existing shell increments
Oyster_height
Measured maximum height of the shell
Oyster_length
Measured maximum length of the shell in anterio-posterior direction
name_file
string indicating the name that should be added to
all exported model results
Value
Matrix containing all parameters of the shell calculated per sub-increment
and CSV file containing this matrix
subincr_matrix
Revised version of the "incr_matrix" data frame
that contains characteristics calculated for every sub-increment
Details
Runs Oyser_run_sec2, Oyser_run_sec3, Oyser_run_sec4 and
Oyster_Export
References
de Winter, N. J.: ShellTrace v1.0 ? A new approach for modelling
growth and trace element uptake in marine bivalve shells: Model
verification on pacific oyster shells (Crassostrea gigas),
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2017-137,
in review, 2017.
# NOT RUN {# }# NOT RUN { GList<-Oyster_growth_run(TRUE, O1_input, image_length, season_length=250,
Xstep=1, Tstep=1, Oyster_height, Oyster_length,name_file="test_export")
# }