Oyster_phase_stats

matrix of phases of each pixel sorted by X- and Y-coordinate
 of the pixel

phasemat

Matrix containing colour and trace element data of the phases
 in the XRF phase map

phases

Function that searches through the matrix of phases per pixel and
 exports the statistics of representation of different phases in the map as
 well as the bulk composition of pixels in the map.
 de Winter, N. J. (2017) &lt;doi:10.5194/gmd-2017-137&gt;

Contains all the formulae of the growth and trace element uptake model described in the equally-named
Geoscientific Model Development paper (de Winter, 2017, <doi:10.5194/gmd-2017-137>). The model takes as input a file with X- and Y-coordinates of digitized
growth increments recognized on a longitudinal cross section through the bivalve shell, as well as a BMP file of an elemental map of the
cross section surface with chemically distinct phases separated by phase analysis. It proceeds by a step-by-step process described in
the paper, by which digitized growth increments are used to calculate changes in shell height, shell thickness, shell volume, shell mass
and shell growth rate through the bivalve's life time. Then, results of this growth modelling are combined with the trace element mapping
results to trace the incorporation of trace elements into the bivalve shell. Results of various modelling parameters can be exported in
the form of XLSX files.

Oyster_phase_stats: Function that exports phase statistics

Description

Usage

Arguments

Value

Details

References

See Also

Examples