Oyster_run_sec4: Runs complete Step 4 of the growth model
Description
Function that combines all functions in Step 4 of the bivalve growth
model and runs them consecutively given the right input.
de Winter, N. J. (2017) <doi:10.5194/gmd-2017-137>
Matrix of X- and Y-coordinates of all interpolated sub-increments
subincr_matrix
Revised version of the "yearly_matrix" data frame that
contains characteristics calculated for every sub-increment
Xstep
The step size (dx) in X-direction used to interpolate coordinates
of shell increments
Value
A list of two items:
subincr_matrix
Revised version of the "incr_matrix" data frame that
contains characteristics calculated for every sub-increment
IncGAnet
Matrix of areas of cross sections in YZ-directions sorted by
X-values and by sub-increment
Details
This function runs the functions Oyster_Z_matrices and Oyster_Volumes
consecutively
References
de Winter, N. J.: ShellTrace v1.0 ? A new approach for modelling
growth and trace element uptake in marine bivalve shells: Model verification
on pacific oyster shells (Crassostrea gigas), Geosci. Model Dev. Discuss.,
https://doi.org/10.5194/gmd-2017-137, in review, 2017.