Oyster_subincr_phases: Calculates proportion of phases in each sub-increment
Description
Function that takes the matrix of sub-increment positions and the
matrix of phases and calculates the amount of pixels of each phase that is
contained in each sub-increment based on pixelsize and phase characteristics.
de Winter, N. J. (2017) <doi:10.5194/gmd-2017-137>
Matrix of X- and Y-coordinates of all interpolated sub-increments
phasemat
matrix of phases of each pixel sorted by X- and Y-coordinate
of the pixel
pixelsize
size of pixels in the phase map in millimeter
phases
Matrix containing colour and trace element data of the phases
in the XRF phase map
Value
A matrix of the amount of pixels for each phase found in every sub-increment
phase_mat
Matrix of amounts of pixels of each phase per sub-increment
Details
For every sub-increment, all pixels that cover area in the sub-increment
are identified based on the pixel size of the phase map and the X- and
Y-positions of the sub-increments. The amount of pixels of each phase in the
sub-increment is saved in a new matrix of phases per sub-increment
References
de Winter, N. J.: ShellTrace v1.0 ? A new approach for modelling
growth and trace element uptake in marine bivalve shells: Model verification
on pacific oyster shells (Crassostrea gigas), Geosci. Model Dev. Discuss.,
https://doi.org/10.5194/gmd-2017-137, in review, 2017.