shiftR (version 1.5)

Fast Enrichment Analysis via Circular Permutations

Description

Fast enrichment analysis for locally correlated statistics via circular permutations. The analysis can be performed at multiple significance thresholds for both primary and auxiliary data sets with efficient correction for multiple testing.

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Version

Install

install.packages('shiftR')

Monthly Downloads

122

Version

1.5

License

LGPL-3

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Repository

https://github.com/andreyshabalin/shiftR

Maintainer

Andrey A Shabalin

Last Published

March 22nd, 2019

Functions in shiftR (1.5)

simulate

Generate Artificial Data for Tests and Illustrations

shiftrPermBinary

Fast Enrichment Testing on Binary Outcomes via Circular Permutations

singlePermutation

Count Feature Overlap Under a Permutation

getOffsets

Generate Random or Uniformly Spaced Permutation Offsets

matchDatasets

Match Two Data Sets by Location

cramerV

Calculate Cramer's V (phi) Coefficient

enrichmentAnalysis

Fast Enrichment Testing via Circular Permutations on Non-Binary Outcomes

shiftrPrepare

Prepare Data for Fast Circular Permutation Analysis

shiftR-package

Fast Enrichment Analysis via Circular Permutations