shinyMethyl (version 1.6.2)

runShinyMethyl: Run the interactive shinyMethyl session

Description

Function to run the interactive shinyMethyl session from a shinyMethylSet.

Usage

runShinyMethyl(shinyMethylSet1, shinyMethylSet2 = NULL)

Arguments

shinyMethylSet1

shinyMethylSet that must be extracted from an RGChannelSet

shinyMethylSet2

optional shinyMethylSet that must be extracted from an GenomicRatioSet

Value

• No value returned. Instead the shinyMethyl interactive session is launched.

See Also

shinyMethylSet

Examples

if (require(minfiData)){
  baseDir <- system.file("extdata", package = "minfiData")
  targets <- read.450k.sheet(baseDir)
  targets$Sample_Plate <- substr(targets$Slide,1,7)
  RGSet <- read.450k.exp(base = baseDir, targets = targets)

  summarized.data <- shinySummarize(RGSet)
  runShinyMethyl(summarized.data)
}