FungusTreeNetwork

fungus-tree interaction network
This data set provides information about 154 fungi sampled on 51 tree species.
Composed of nodes and edges lists build based on sbm data package.

datasets

A 'shiny' interface for a simpler use of the 'sbm' R package.
It also contains useful functions to easily explore the 'sbm' package
results.  With this package you should be able to use the stochastic
block model without any knowledge in R, get automatic reports and nice
visuals, as well as learning the basic functions of 'sbm'.

Julie Aubert

shinySbm

'shiny' Application to Use the Stochastic Block Model

Theodore Vanrenterghem

Saint-Clair Chabert-Liddell

großBM team 

INRAE 

FungusTreeNetwork function

A list of two elements, networks and sbmResults.
networks is itself a list with the following entries:<dl>
 <dt>tee_names:</dt>
<dd>(character) tree names</dd> <dt>fungus_names:</dt>
<dd>(character) fungus names</dd> <dt>tree_tree:</dt>
<dd>a list describing the unipartite tree_tree networks with nodes (data.frame), edges (data.frame) and type (character specifying the type of the network)</dd> <dt>fungus_tree:</dt>
<dd>a list describing the bipartite fungus_tree networks with nodes (data.frame), edges (data.frame) and type (character)</dd> 
</dl>sbmResults is a list with the following entries:<dl>
 <dt>tree_tree</dt>
<dd>Results of <code>sbm::estimateSimpleSBM</code>
 applied on tree_tree data with a Poisson model.</dd> <dt>fungus_tree</dt>
<dd>Results of <code>sbm::estimateBipartiteSBM</code>
 applied on fungus_tree data with a Bernoulli model.</dd>
</dl>

Format

FungusTreeNetwork — FungusTreeNetwork

A list of two elements, networks and sbmResults.
networks is itself a list with the following entries:<dl>
 <dt>tee_names:</dt>
<dd>(character) tree names</dd>

 <dt>fungus_names:</dt>
<dd>(character) fungus names</dd>

 <dt>tree_tree:</dt>
<dd>a list describing the unipartite tree_tree networks with nodes (data.frame), edges (data.frame) and type (character specifying the type of the network)</dd>

 <dt>fungus_tree:</dt>
<dd>a list describing the bipartite fungus_tree networks with nodes (data.frame), edges (data.frame) and type (character)</dd>

 
</dl>sbmResults is a list with the following entries:<dl>
 <dt>tree_tree</dt>
<dd>Results of <code>sbm::estimateSimpleSBM</code>
 applied on tree_tree data with a Poisson model.</dd>

 <dt>fungus_tree</dt>
<dd>Results of <code>sbm::estimateBipartiteSBM</code>
 applied on fungus_tree data with a Bernoulli model.</dd>


</dl>

FungusTreeNetwork: FungusTreeNetwork

Description

Usage

Arguments

Format