MCC_FluA_H3_tree

<p>This example data was
reported on Liang et al. 2014</p>

data

Sequences sampled at different time points can be used to infer molecular phylogenies on natural time scales, but if the sequences records inaccurate sampling times, that are not the actual sampling times, then it will affect the molecular phylogenetic analysis. This shiny application helps exploring temporal characteristics of the evolutionary trees through linear regression analysis and with the ability to identify and remove incorrect labels. The method was extended to support exploring other phylogenetic signals under strict and relaxed models.

Guangchuang Yu

shinyTempSignal

Explore Temporal and Other Phylogenetic Signals

Xiao Luo

Li Zhan

Xuanan Zhu

Jianfeng Lin

MCC_FluA_H3_tree function

Format

Example data: a tree of 76 H3 hemagglutinin gene sequences of
 a lineage containing swine and human influenza A viruses — MCC_FluA_H3_tree

Example data: a tree of 76 H3 hemagglutinin gene sequences of
 a lineage containing swine and human influenza A viruses

MCC_FluA_H3_tree: Example data: a tree of 76 H3 hemagglutinin gene sequences of a lineage containing swine and human influenza A viruses

Description

Arguments

Value

Format

Examples