shipunov (version 1.17.1)

Hclust.match: Counts matches between two hierarchical clusterings

Description

Counts matches between two hierarchical clusterings

Usage

Hclust.match(hc1, hc2, scale=FALSE)

Arguments

hc1

First hclust object

hc2

Second hclust object

scale

Scale by the sum size of trees?

Author

Alexey Shipunov

Details

'Hclust.match()' counts matches between two hierarchical clusterings (based on 'cutree()').

Result is a sort of consensus distances. Useful, for example, for clustering heatmaps.

Examples

aa.d1 <- hclust(dist(t(atmospheres)))
aa.d2 <- hclust(as.dist(1 - abs(cor(atmospheres, method="spearman"))),
 method="ward.D")
aa12.match <- Hclust.match(aa.d1, aa.d2)
heatmap(aa12.match, scale="none")