sameSourceDataCheck

Checks if the provided data and models came from same source by looking to ".dataInputName" columns of the inputs.

Aims to quantify time intensity data by using sigmoidal and
double sigmoidal curves. It fits straight lines, sigmoidal,
and double sigmoidal curves on to time vs intensity data.
Then all the fits are used to make decision on which model
best describes the data. This method was first developed
in the context of single-cell viral growth analysis (for
details, see Caglar et al. (2018) <doi:10.7717/peerj.4251>),
and the package name stands for "SIngle CEll Growth Analysis in R".

Jo Hardin

sicegar

Analysis of Single-Cell Viral Growth Curves

Johanna Hardin

Samuel Butler

Phineus Choi

Thomas Matheis

Mira Terdiman

M. Umut Caglar

Claus O. Wilke

sameSourceDataCheck function

<dl><dt>dataInput</dt>
<dd>a dataframe composed of two columns. One is for time and the other is for intensity. Should be normalized data generated by sicegar::normalizeData().</dd>
<dt>sigmoidalFitVector</dt>
<dd>is the output of sigmoidalFitFunction. Default is NULL.</dd>
<dt>doubleSigmoidalFitVector</dt>
<dd>is the output of double sigmoidal fit function. Default is NULL.</dd></dl>

Arguments

Check that data came from the same source. — sameSourceDataCheck

<dl>

<dt>dataInput</dt>
<dd>a dataframe composed of two columns. One is for time and the other is for intensity. Should be normalized data generated by sicegar::normalizeData().</dd>


<dt>sigmoidalFitVector</dt>
<dd>is the output of sigmoidalFitFunction. Default is NULL.</dd>


<dt>doubleSigmoidalFitVector</dt>
<dd>is the output of double sigmoidal fit function. Default is NULL.</dd>

</dl>

sameSourceDataCheck: Check that data came from the same source.

Description

Usage

Value

Arguments