sidier-package

sidier

sidier is a library and R package for evolutionary reconstruction based on substitutions and insertion-deletion (indels) analyses in a distance-based framework.

SIDIER provides functions for reading and writing fasta
        sequences, finding unique haplotypes, estimating genetic
        distances based on gap positions and lengths, combining
        distance matrices and estimating and plotting percolation
        networks.

sidier-package: SIDIER: Substitution and Indel Distances to Infer Evolutionary Relationships

Description

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References