sidier is a library and R package for evolutionary reconstruction based on substitutions and insertion-deletion (indels) analyses in a distance-based framework.
| Package: | sidier |
| Type: | Package |
| Version: | 3.0.1 |
| Date: | 2015-02-27 |
| License: | GPL-2 |
This package estimates evolutionary distances based on indels that may be combined with the information provided by substitutions and depicted as networks.
Mu<U+00F1>oz-Pajares, A. J. (2013). SIDIER: substitution and indel distances to infer evolutionary relationships. Methods in Ecology and Evolution 4, 1195-1200. doi: 10.1111/2041-210X.12118