CN.features

<p>Classfication Table of Copy Number Features Devised by Wang et al.</p>

Genomic alterations including single nucleotide
substitution, copy number alteration, etc. are the major force for
cancer initialization and development. Due to the specificity of
molecular lesions caused by genomic alterations, we can generate
characteristic alteration spectra, called 'signature' (Wang, Shixiang,
et al.  (2020) <DOI:10.1101/2020.04.27.20082404> & Alexandrov, Ludmil
B., et al. (2020) <DOI:10.1038/s41586-020-1943-3> & Macintyre, Geoff,
et al. (2018) <DOI:10.1038/s41588-018-0179-8>).  This package helps
users to extract, analyze and visualize signatures from genomic
alteration records, thus providing new insight into cancer study.

Shixiang Wang

sigminer

Extract, Analyze and Visualize Signatures for Genomic Variations

Xue-Song Liu

Tao Wu

Ziyu Tao

Geoffrey Macintyre

Anand Mayakonda

CN.features function

<p>A <code>data.table</code> with "sigminer.features" class name</p>

Format

Classfication Table of Copy Number Features Devised by Wang et al. — CN.features

Classfication Table of Copy Number Features Devised by Wang et al.

CN.features: Classfication Table of Copy Number Features Devised by Wang et al.

Description

Arguments

Format

Examples