get_tidy_association

data returned by <code><a rd-options="=get_sig_feature_association" href="/link/get_sig_feature_association()?package=sigminer&version=1.0.6&to=%3Dget_sig_feature_association" data-mini-rdoc="=get_sig_feature_association::get_sig_feature_association()">get_sig_feature_association()</a></code>

cor_res

logical, if <code>TRUE</code>, adjust p values by data type.

p_adjust

p value correction method, see <a rd-options="stats:p.adjust" href="/link/stats%3A%3Ap.adjust?package=sigminer&version=1.0.6&to=stats%3Ap.adjust" data-mini-rdoc="stats:p.adjust::stats::p.adjust">stats::p.adjust</a> for
more detail.

method

Get Tidy Signature Association Results

Genomic alterations including single nucleotide
substitution, copy number alteration, etc. are the major force for
cancer initialization and development. Due to the specificity of
molecular lesions caused by genomic alterations, we can generate
characteristic alteration spectra, called 'signature' (Wang, Shixiang,
et al. (2020) <DOI:10.1101/2020.04.27.20082404> & Alexandrov, Ludmil
B., et al. (2020) <DOI:10.1038/s41586-020-1943-3> & Macintyre, Geoff,
et al. (2018) <DOI:10.1038/s41588-018-0179-8>). This package helps
users to extract, analyze and visualize signatures from genomic
alteration records, thus providing new insight into cancer study.

Shixiang Wang

sigminer

Extract, Analyze and Visualize Signatures for Genomic Variations

Xue-Song Liu

Tao Wu

Ziyu Tao

Geoffrey Macintyre

Anand Mayakonda

get_tidy_association function

data returned by <code><a rd-options='=get_sig_feature_association' href='get_sig_feature_association()'>get_sig_feature_association()</a></code>

p value correction method, see <a rd-options='stats:p.adjust' href='stats::p.adjust'>stats::p.adjust</a> for
more detail.

get_tidy_association: Get Tidy Signature Association Results

Description

Usage

Arguments

Value

See Also