subset.CopyNumber

a <a rd-options="" href="/link/CopyNumber?package=sigminer&version=1.0.6" data-mini-rdoc="sigminer::CopyNumber">CopyNumber</a> object to be subsetted.

logical expression indicating rows to keep.

subset

further arguments to be passed to or from other methods.
Useless here.

Subset <code>data</code> slot of <a rd-options="" href="/link/CopyNumber?package=sigminer&version=1.0.6" data-mini-rdoc="sigminer::CopyNumber">CopyNumber</a> object, un-selected rows will move to
dropoff.segs slot, annotation slot will update in the same way.

Genomic alterations including single nucleotide
substitution, copy number alteration, etc. are the major force for
cancer initialization and development. Due to the specificity of
molecular lesions caused by genomic alterations, we can generate
characteristic alteration spectra, called 'signature' (Wang, Shixiang,
et al. (2020) <DOI:10.1101/2020.04.27.20082404> & Alexandrov, Ludmil
B., et al. (2020) <DOI:10.1038/s41586-020-1943-3> & Macintyre, Geoff,
et al. (2018) <DOI:10.1038/s41588-018-0179-8>). This package helps
users to extract, analyze and visualize signatures from genomic
alteration records, thus providing new insight into cancer study.

Shixiang Wang

sigminer

Extract, Analyze and Visualize Signatures for Genomic Variations

Xue-Song Liu

Tao Wu

Ziyu Tao

Geoffrey Macintyre

Anand Mayakonda

subset.CopyNumber function

a <a rd-options='' href='CopyNumber'>CopyNumber</a> object to be subsetted.

Subset <code>data</code> slot of <a rd-options='' href='CopyNumber'>CopyNumber</a> object, un-selected rows will move to
dropoff.segs slot, annotation slot will update in the same way.

subset.CopyNumber: Subsetting CopyNumber object

Description

Usage

Arguments

Value