read_copynumber_seqz

target_dir

if <code>TRUE</code>, return a <code>data.frame</code> directly, otherwise return a
<a rd-options="" href="/link/CopyNumber?package=sigminer&version=1.2.5" data-mini-rdoc="sigminer::CopyNumber">CopyNumber</a> object.

return_df

other parameters passing to <code><a rd-options="=read_copynumber" href="/link/read_copynumber()?package=sigminer&version=1.2.5&to=%3Dread_copynumber" data-mini-rdoc="=read_copynumber::read_copynumber()">read_copynumber()</a></code>.

Read Absolute Copy Number Profile from Sequenza Result Directory

Genomic alterations including single nucleotide
substitution, copy number alteration, etc. are the major force for
cancer initialization and development. Due to the specificity of
molecular lesions caused by genomic alterations, we can generate
characteristic alteration spectra, called 'signature' (Wang, Shixiang,
et al. (2020) <DOI:10.1101/2020.04.27.20082404> & Alexandrov, Ludmil
B., et al. (2020) <DOI:10.1038/s41586-020-1943-3> & Macintyre, Geoff,
et al. (2018) <DOI:10.1038/s41588-018-0179-8>). This package helps
users to extract, analyze and visualize signatures from genomic
alteration records, thus providing new insight into cancer study.

Shixiang Wang

sigminer

Extract, Analyze and Visualize Mutational Signatures for Genomic
Variations

Ziyu Tao

Huimin Li

Tao Wu

Xue-Song Liu

Geoffrey Macintyre

Anand Mayakonda

read_copynumber_seqz function

if <code>TRUE</code>, return a <code>data.frame</code> directly, otherwise return a
<a rd-options='' href='CopyNumber'>CopyNumber</a> object.

other parameters passing to <code><a rd-options='=read_copynumber' href='read_copynumber()'>read_copynumber()</a></code>.

read_copynumber_seqz: Read Absolute Copy Number Profile from Sequenza Result Directory

Description

Usage

Arguments

Value