get_tidy_association

Get Tidy Signature Association Results

Genomic alterations including single nucleotide substitution,
copy number alteration, etc. are the major force for cancer
initialization and development. Due to the specificity of molecular
lesions caused by genomic alterations, we can generate characteristic
alteration spectra, called 'signature' (Wang, Shixiang, et al. (2021)
<DOI:10.1371/journal.pgen.1009557> & Alexandrov, Ludmil B., et al.
(2020) <DOI:10.1038/s41586-020-1943-3> & Steele Christopher D., et al.
(2022) <DOI:10.1038/s41586-022-04738-6>). This package helps users to
extract, analyze and visualize signatures from genomic alteration
records, thus providing new insight into cancer study.

Shixiang Wang

sigminer

Extract, Analyze and Visualize Mutational Signatures for Genomic
Variations

Ziyu Tao

Huimin Li

Tao Wu

Xue-Song Liu

Anand Mayakonda

get_tidy_association function

<dl><dt>cor_res</dt>
<dd>data returned by <code>get_sig_feature_association()</code></dd>
<dt>p_adjust</dt>
<dd>logical, if <code>TRUE</code>, adjust p values by data type.</dd>
<dt>method</dt>
<dd>p value correction method, see <a href="/link/stats%3A%3Ap.adjust?package=sigminer&version=2.3.1" data-mini-rdoc="sigminer::stats::p.adjust">stats::p.adjust</a> for
more detail.</dd></dl>

Arguments

Get Tidy Signature Association Results — get_tidy_association

<dl>

<dt>cor_res</dt>
<dd>data returned by <code>get_sig_feature_association()</code></dd>


<dt>p_adjust</dt>
<dd>logical, if <code>TRUE</code>, adjust p values by data type.</dd>


<dt>method</dt>
<dd>p value correction method, see <a href='https://rdrr.io/r/stats/p.adjust.html'>stats::p.adjust</a> for
more detail.</dd>

</dl>

get_tidy_association: Get Tidy Signature Association Results

Description

Usage

Value

Arguments

See Also