read_copynumber_ascat

Note, the result is not a <code>CopyNumber</code> object, you need to generate it
by yourself.

Genomic alterations including single nucleotide substitution,
copy number alteration, etc. are the major force for cancer
initialization and development. Due to the specificity of molecular
lesions caused by genomic alterations, we can generate characteristic
alteration spectra, called 'signature' (Wang, Shixiang, et al. (2021)
<DOI:10.1371/journal.pgen.1009557> & Alexandrov, Ludmil B., et al.
(2020) <DOI:10.1038/s41586-020-1943-3> & Steele Christopher D., et al.
(2022) <DOI:10.1038/s41586-022-04738-6>). This package helps users to
extract, analyze and visualize signatures from genomic alteration
records, thus providing new insight into cancer study.

Shixiang Wang

sigminer

Extract, Analyze and Visualize Mutational Signatures for Genomic
Variations

Ziyu Tao

Huimin Li

Tao Wu

Xue-Song Liu

Anand Mayakonda

read_copynumber_ascat function

<dl><dt>x</dt>
<dd>one or more <code>.rds</code> format files which contains <code>ASCAT</code> object from result of <code>ascat.runAscat()</code>
in <a href="https://github.com/VanLoo-lab/ascat">ASCAT</a> package.</dd></dl>

Arguments

Read Copy Number Data from ASCAT Result Files — read_copynumber_ascat

<dl>

<dt>x</dt>
<dd>one or more <code>.rds</code> format files which contains <code>ASCAT</code> object from result of <code>ascat.runAscat()</code>
in <a href='https://github.com/VanLoo-lab/ascat'>ASCAT</a> package.</dd>

</dl>

read_copynumber_ascat: Read Copy Number Data from ASCAT Result Files

Description

Usage

Value

Arguments