use_color_style

Genomic alterations including single nucleotide substitution,
copy number alteration, etc. are the major force for cancer
initialization and development. Due to the specificity of molecular
lesions caused by genomic alterations, we can generate characteristic
alteration spectra, called 'signature' (Wang, Shixiang, et al. (2021)
<DOI:10.1371/journal.pgen.1009557> & Alexandrov, Ludmil B., et al.
(2020) <DOI:10.1038/s41586-020-1943-3> & Steele Christopher D., et al.
(2022) <DOI:10.1038/s41586-022-04738-6>). This package helps users to
extract, analyze and visualize signatures from genomic alteration
records, thus providing new insight into cancer study.

Shixiang Wang

sigminer

Extract, Analyze and Visualize Mutational Signatures for Genomic
Variations

Ziyu Tao

Huimin Li

Tao Wu

Xue-Song Liu

Anand Mayakonda

use_color_style function

<dl><dt>style</dt>
<dd>one of 'default' and 'cosmic'.</dd>
<dt>mode</dt>
<dd>only used when the <code>style</code> is 'cosmic', can be one of
"SBS", "copynumber", "DBS", "ID".</dd>
<dt>method</dt>
<dd>used to set a more custom palette for different methods.</dd></dl>

Arguments

Set Color Style for Plotting — use_color_style

<dl>

<dt>style</dt>
<dd>one of 'default' and 'cosmic'.</dd>


<dt>mode</dt>
<dd>only used when the <code>style</code> is 'cosmic', can be one of
"SBS", "copynumber", "DBS", "ID".</dd>


<dt>method</dt>
<dd>used to set a more custom palette for different methods.</dd>

</dl>

Set Color Style for Plotting

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use_color_style: Set Color Style for Plotting

Description

Usage

Value

Arguments

Examples