signalHsmm (version 1.3)

predict.sighsmm_model: Predict sighsmm_model object

Description

Predicts the presence of signal peptides using signalHsmm models.

Usage

## S3 method for class 'sighsmm_model':
predict(object, newdata, ...)

Arguments

object

sighsmm_model object.

newdata

unknown sequence of class character or character. Alternatively, a list of sequences in mentioned formats.

...

further arguments passed to or from other methods.

Examples

#remember to remove it
pos_train_ultrahard <- read_uniprot("pos_ultrahard_data.txt", euk = TRUE)
model1 <- train_hsmm(pos_train_ultrahard, aa_group = aaaggregation)
predict(model1, benchmark_dat[1L:5])