benchmark_dat

Lists eukaryotic proteins added to UniProt database release 
2015_06 between 1.01.2010 and 1.06.2015 (140 proteins with signal peptide and 280 randomly 
sampled proteins without signal peptide).

datasets

Predicts the presence of signal peptides in eukaryotic protein
using hidden semi-Markov models. The implemented algorithm can be accessed from
both the command line and GUI.

Michal Burdukiewicz

signalHsmm

Predict Presence of Signal Peptides

Piotr Sobczyk

Jaroslaw Chilimoniuk

benchmark_dat function

a list of <code><a rd-options="seqinr" href="/link/SeqFastaAA?package=signalHsmm&version=1.5&to=seqinr" data-mini-rdoc="seqinr::SeqFastaAA">SeqFastaAA</a></code> objects. 
Slot <code>sig</code> contains the range of signal peptide (if any).

Format

Benchmark data set for signalHsmm — benchmark_dat

a list of <code><a rd-options='seqinr' href='SeqFastaAA'>SeqFastaAA</a></code> objects. 
Slot <code>sig</code> contains the range of signal peptide (if any).

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benchmark_dat: Benchmark data set for signalHsmm

Description

Usage

Arguments

Format

Examples