sigr (version 1.1.5)

wrapFisherTest.data.frame: Wrap fisher.test (test of categorical independence).

Description

Wrap fisher.test (test of categorical independence).

Usage

# S3 method for data.frame
wrapFisherTest(
  x,
  Column1Name,
  Column2Name,
  ...,
  na.rm = FALSE,
  workspace = 2e+05,
  hybrid = FALSE,
  control = list(),
  or = 1,
  alternative = "two.sided",
  conf.int = TRUE,
  conf.level = 0.95,
  simulate.p.value = FALSE,
  B = 2000
)

Value

wrapped test.

Arguments

x

data.frame

Column1Name

character column 1 name

Column2Name

character column 2 name

...

extra arguments (not used)

na.rm

logical, if TRUE remove NA values

workspace

passed to fisher.test

hybrid

passed to fisher.test

control

passed to fisher.test

or

passed to fisher.test

alternative

passed to fisher.test

conf.int

passed to fisher.test

conf.level

passed to fisher.test

simulate.p.value

passed to fisher.test

B

passed to fisher.test

Examples

d <- data.frame(x=c('b','a','a','a','b','b','b'),
                y=c('1','1','1','2','2','2','2'))
wrapFisherTest(d, 'x', 'y')