sim1000G (version 1.40)

loadSimulation: Load some previously saved simulation data by function saveSimulation

Description

Load some previously saved simulation data by function saveSimulation

Usage

loadSimulation(id)

Arguments

id

Name the simulation to load which was previously saved by saveSimulation

Examples

# NOT RUN {

examples_dir = system.file("examples", package = "sim1000G")
vcf_file = file.path(examples_dir, "region.vcf.gz")

vcf = readVCF( vcf_file, maxNumberOfVariants = 100 ,
           min_maf = 0.12 ,max_maf = NA)

# For a realistic genetic map
# use the function readGeneticMap
generateUniformGeneticMap()

startSimulation(vcf, totalNumberOfIndividuals = 200)

ped1 = newNuclearFamily(1)

saveSimulation("sim1")

vcf = readVCF( vcf_file, maxNumberOfVariants = 100 ,
               min_maf = 0.02 ,max_maf = 0.5)

startSimulation(vcf, totalNumberOfIndividuals = 200)
saveSimulation("sim2")

loadSimulation("sim1")



# }