sim1000G (version 1.40)

saveSimulation: Save the data for a simulation for later use. When simulating multiple populations it allows saving and restoring of simulation data for each population.

Description

Save the data for a simulation for later use. When simulating multiple populations it allows saving and restoring of simulation data for each population.

Usage

saveSimulation(id)

Arguments

id

Name the simulation will be saved as.

Examples

# NOT RUN {


examples_dir = system.file("examples", package = "sim1000G")

vcf_file = file.path(examples_dir, "region.vcf.gz")
vcf = readVCF( vcf_file, maxNumberOfVariants = 100 ,
               min_maf = 0.12 ,max_maf = NA)


# For realistic data use the functions downloadGeneticMap
generateUniformGeneticMap()

startSimulation(vcf, totalNumberOfIndividuals = 200)

ped1 = newNuclearFamily(1)

saveSimulation("sim1")

# }