CCcolors

The original/official palette is the original eight colors for the
Collaborative Cross founder strains. The alt palette is a slightly
modified version, but still not color-blind friendly. The default
(new) palette was derived from the the Okabe-Ito color blind
friendly palette in Wong (2011) Nature Methods
tools:::Rd_expr_doi("10.1038/nmeth.1618").

color

Simulate and plot general experimental crosses. The focus is on simulating genotypes with an aim towards flexibility rather than speed. Meiosis is simulated following the Stahl model, in which chiasma locations are the superposition of two processes: a proportion p coming from a process exhibiting no interference, and the remainder coming from a process following the chi-square model.

Karl Broman

simcross

Simulate Experimental Crosses

Karl W Broman

CCcolors function

<dl><dt>palette</dt>
<dd>Which version of the colors to use? (New, alternative, or original/official)</dd></dl>

Arguments

Collaborative Cross colors — CCcolors

<dl>

<dt>palette</dt>
<dd>Which version of the colors to use? (New, alternative, or original/official)</dd>

</dl>

CCcolors: Collaborative Cross colors

Description

Usage

Value

Arguments

Details

Examples