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simecol (version 0.8-7)

Simulation of Ecological (and Other) Dynamic Systems

Description

An object oriented framework to simulate ecological (and other) dynamic systems. It can be used for differential equations, individual-based (or agent-based) and other models as well. The package helps to organize scenarios (to avoid copy and paste) and aims to improve readability and usability of code.

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Version

Install

install.packages('simecol')

Monthly Downloads

611

Version

0.8-7

License

GPL (>= 2)

Maintainer

Thomas Petzoldt

Last Published

September 3rd, 2015

Functions in simecol (0.8-7)

initialize-methods

Methods for Function `initialize' in Package `simecol'
listOrNULL-class

Helpful Union Classes
fixParms

Fix `parms', `init' or `times' Slot of `simecol' Objects
simecol-package

The `simecol' Package
addtoenv

Add Functions from a Non-nested List of Named Functions to a Common Environment
lv3

Lotka-Volterra-Type Model with Resource, Prey and Predator
observer

Get or Set an Observer Functions to an `simObj' Object
conway

The Classical Coway's Game of Life
neighbours

Count Number of Neighbours on a Rectangular Grid.
eightneighbours

Count Number of Neighbours in a Rectangular Cellular Grid.
print-methods

Methods for Function `print' in Package `simecol'
chemostat

Chemostat Model
plot-methods

Methods for Function plot in Package `simecol'
parms

Accessor Functions for `simObj' Objects
iteration

Discrete Simulation
CA

Stochastic Cellular Automaton
odeModel

Generating-functions (Constructors) to Create Objects of Classes `odeModel', `rwalkModel' and `gridModel'.
peaks

Find Peaks Within xy-Data
modelFit-class

Class of Fitted Model Parameters
approxTime

Linear Interpolation with Complete Matrices or Data Frames
fitOdeModel

Parameter Fitting for odeModel Objects
ssqOdeModel

Sum of Squares Between odeModel and Data
as.simObj

Coerce simObj Objects to Lists and Vice-Versa
fromtoby

Create Regular Sequence from 'from-to-by' Vector
p.constrain

Transform Data Between Unconstrained and Box-constrained Scale
upca

The Uniform Period Chaotic Amplitude Model
mixNamedVec

Mix Two Named Vectors, Resolving Name Conflicts
lv

Lotka-Volterra Predator-Prey Model
pcuseries

Generate Plackett Bivariate Random Numbers
modelFit-method

Show Results of Model Fits
diffusion

A Random Walk Particle Diffusion Model
seedfill

Color Fill Algorithm
sEdit

Simple editing
sim-methods

Simulation of 'simObj' model objects