- $replication
the replication times of simulation.
- $seed.sim
simulation random seed.
- $out
the prefix of output files.
- $outpath
the path of output files, Simer writes files only if outpath is not "NULL".
- $out.format
"numeric" or "plink", the data format of output files.
- $pop.gen
the generations of simulated population.
- $out.geno.gen
the output generations of genotype data.
- $out.pheno.gen
the output generations of phenotype data.
- $useAllGeno
whether to use all genotype data to simulate phenotype.
- $missing.geno
the ratio of missing values in genotype data.
- $missing.phe
the ratio of missing values in phenotype data.
- $ncpus
the number of threads used, if NULL, (logical core number - 1) is automatically used.
- $verbose
whether to print detail.