PairComp-class: Class "PairComp" Represents the results of pairwise comparison between two experimental factors

Description

Holds fold-change, ttest p-score and detection p-value calls(if used) between a pair of experimental factors.

means:: Object of class "matrix" Mean values for each of the experimental factors.
fc:: Object of class "numeric" Fold change between the means.
tt:: Object of class "numeric" P-score between the factors.
calls:: Object of class "matrix" Detection p-values for each probeset on each array.
group:: Object of class "character" The name of the factor that was compared.
members:: Object of class "character" A list containing the two levels compared between.
pData:: Object of class "pData" The phenoData for the members that were compared.
calculated.from:: Object of class "ExpressionSet" The original expression set that was being compared.

[: signature(x = "PairComp"): get the values for the specified gene(s).
[<-: signature(x = "PairComp"): not supported.
calls: signature(object = "PairComp"): the detection.p.values.
fc: signature(object = "PairComp"): the fold-changes.
group: signature(object = "PairComp"): the name of the group that was compared.
means: signature(object = "PairComp"): the means of the two experimental factors that were compared.
members: signature(object = "PairComp"): the members of that group that were compared.
pairwise.filter: signature(object = "PairComp"): Take a PairComp object and filter it to yield probesets that pass the specified criteria.
tt: signature(object = "PairComp"): the results of a ttest between groups.
pData: signature(object = "pData"): The phenoData from the members that were compared.
calculated.from: signature(object = "ExpressionSet"): The original expression set.