qc.read.file

Affymetrix define a series of QC parameters for their arrays. Many of
  these rely on specific probeset that differ between arrays and are
  used to calculate things like 3'/5' ratios. See <code><a href="/link/qc.affy?package=simpleaffy&version=2.48.0&to=simpleaffy" rd-options="simpleaffy" data-mini-rdoc="simpleaffy::qc.affy">qc.affy</a></code>
  for more details. This is usually done by a call to
  <code><a href="/link/setQCEnvironment?package=simpleaffy&version=2.48.0&to=simpleaffy" rd-options="simpleaffy" data-mini-rdoc="simpleaffy::setQCEnvironment">setQCEnvironment</a></code>; the function described here is the one
  that does the actual loading of the
  configuration file.  See the package vignette for details of the config
  file's syntax.

misc

Provides high level functions for reading Affy .CEL files,
phenotypic data, and then computing simple things with it, such
as t-tests, fold changes and the like. Makes heavy use of the
affy library. Also has some basic scatter plot functions and
mechanisms for generating high resolution journal figures...

Crispin Miller

simpleaffy

Very simple high level analysis of Affymetrix data

qc.read.file function

Affymetrix define a series of QC parameters for their arrays. Many of
  these rely on specific probeset that differ between arrays and are
  used to calculate things like 3'/5' ratios. See <code><a href="qc.affy" rd-options="simpleaffy">qc.affy</a></code>
  for more details. This is usually done by a call to
  <code><a href="setQCEnvironment" rd-options="simpleaffy">setQCEnvironment</a></code>; the function described here is the one
  that does the actual loading of the
  configuration file.  See the package vignette for details of the config
  file's syntax.

qc.read.file: Read a file defining the QC parameters for a specified array and set up the QC Environment

Description

Usage

Arguments

Value

References

See Also

Examples