simpleaffy (version 2.48.0)

trad.scatter.plot: Does a Traditional Scatter Plot of Expression Data

Description

Plots expression data as a scatter plot with optional fold-change lines

Usage

trad.scatter.plot(x, y, add = FALSE, fc.lines = log2(c(2, 4, 6, 8)), draw.fc.lines = TRUE, draw.fc.line.labels = TRUE, fc.line.col = "lightgrey", pch = 20,xlim=NULL,ylim=NULL, ...)

Arguments

x

x coords

y

y coords

add

add this data to an existing graph

fc.lines

Vector of intervals at which to draw fold-change lines

draw.fc.lines

Draw fold change lines?

draw.fc.line.labels

Label the fold change lines with the fold changes they represent?

fc.line.col

The colour to draw fold change lines

pch

Plotting character to use for the scatter data (see plot for more details)

xlim

Range for the xaxis

ylim

Range for the yaxis

...

Additional parameters to pass through to the underlying plot function

References

http://bioinformatics.picr.man.ac.uk/

See Also

plot

Examples

  ## Not run: 
#     trad.scatter.plot(exprs(eset.rma)[,1],exprs(eset.rma)[,4])
#   ## End(Not run)