simulFS

Simulate full sib progeny genotypes from the genotype of the parents (matrixes with the same dimensions). Pair of parents mating will be in the order of the matrixes. We assume that these are diploid organisms.

Simulate genotypes in SNP (single nucleotide polymorphisms) Matrix as random numbers from an uniform distribution, for diploid organisms (coded by 0, 1, 2), Sikorska et al., (2013) <doi:10.1186/1471-2105-14-166>, or half-sib/full-sib SNP matrix from real or simulated parents SNP data, assuming mendelian segregation. Simulate phenotypic traits for real or simulated SNP data, controlled by a specific number of quantitative trait loci and their effects, sampled from a Normal or an Uniform distributions, assuming a pure additive model. This is useful for testing association and genomic prediction models or for educational purposes.

Martin Garcia

simulMGF

Simulate SNP Matrix, Phenotype and Genotypic Effects

simulFS function

<dl> <dt>x</dt>
<dd>genotype matrix of a set of moms</dd> <dt>y</dt>
<dd>genotype matrix of a set of dads</dd> <dt>Nprogeny</dt>
<dd>Nprogeny number of progeny's genotypes to generate from each pair of parents</dd></dl>

Arguments

Martin Nahuel Garcia &lt;orcid:0000-0001-5760-986X&gt;

Author

Function to simulate full sib progeny genotype — simulFS

<dl>

 <dt>x</dt>
<dd>genotype matrix of a set of moms</dd>

 <dt>y</dt>
<dd>genotype matrix of a set of dads</dd>

 <dt>Nprogeny</dt>
<dd>Nprogeny number of progeny's genotypes to generate from each pair of parents</dd>

</dl>

simulFS: Function to simulate full sib progeny genotype

Description

Usage

Value

Arguments

Author

References

Examples