simulHS

Simulate half sib progeny from one genotyped parent assuming a random genotype for the other parental. We assume that these are diploid organisms.

Simulate genotypes in SNP (single nucleotide polymorphisms) Matrix as random numbers from an uniform distribution, for diploid organisms (coded by 0, 1, 2), Sikorska et al., (2013) <doi:10.1186/1471-2105-14-166>, or half-sib/full-sib SNP matrix from real or simulated parents SNP data, assuming mendelian segregation. Simulate phenotypic traits for real or simulated SNP data, controlled by a specific number of quantitative trait loci and their effects, sampled from a Normal or an Uniform distributions, assuming a pure additive model. This is useful for testing association and genomic prediction models or for educational purposes.

Martin Garcia

simulMGF

Simulate SNP Matrix, Phenotype and Genotypic Effects

simulHS function

<dl> <dt>x</dt>
<dd>genotype matrix of a set of moms</dd> <dt>Nprogeny</dt>
<dd>number of progeny's genotypes to simulate for each mom</dd></dl>

Arguments

Martin Nahuel Garcia &lt;orcid:0000-0001-5760-986X&gt;

Author

Function to simulate half sib progeny genotypes — simulHS

<dl>

 <dt>x</dt>
<dd>genotype matrix of a set of moms</dd>

 <dt>Nprogeny</dt>
<dd>number of progeny's genotypes to simulate for each mom</dd>

</dl>

simulHS: Function to simulate half sib progeny genotypes

Description

Usage

Value

Arguments

Author

Details

References

Examples