simulist

simulist-package

Tools to simulate realistic raw case data for an epidemic in the form of line lists and contacts using a branching process. Simulated outbreaks are parameterised with epidemiological parameters and can have age-structured populations, age-stratified hospitalisation and death risk and time-varying case fatality risk.

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Tools to simulate realistic raw case data for an epidemic in
the form of line lists and contacts using a branching process.
Simulated outbreaks are parameterised with epidemiological parameters
and can have age-structured populations, age-stratified
hospitalisation and death risk and time-varying case fatality risk.

Joshua W. Lambert

Simulate Disease Outbreak Line List and Contacts Data

Carmen Tamayo

Hugo Gruson

Pratik R. Gupte

Adam Kucharski

Chris Hartgerink

Sebastian Funk

London School of Hygiene and Tropical Medicine, LSHTM 

simulist-package function

Maintainer: Joshua W. Lambert <a href="/link/joshua.lambert%40lshtm.ac.uk?package=simulist&version=0.5.0" data-mini-rdoc="simulist::joshua.lambert@lshtm.ac.uk">joshua.lambert@lshtm.ac.uk</a> (<a href="https://orcid.org/0000-0001-5218-3046">ORCID</a>) [copyright holder]
Authors:<ul>
<li>Carmen Tamayo <a href="/link/carmen.tamayo-cuartero%40lshtm.ac.uk?package=simulist&version=0.5.0" data-mini-rdoc="simulist::carmen.tamayo-cuartero@lshtm.ac.uk">carmen.tamayo-cuartero@lshtm.ac.uk</a> (<a href="https://orcid.org/0000-0003-4184-2864">ORCID</a>)</li>
</ul>Other contributors:<ul>
<li>Hugo Gruson <a href="/link/hugo%40data.org?package=simulist&version=0.5.0" data-mini-rdoc="simulist::hugo@data.org">hugo@data.org</a> (<a href="https://orcid.org/0000-0002-4094-1476">ORCID</a>) [contributor, reviewer]</li>
<li>Pratik R. Gupte <a href="/link/pratik.gupte%40lshtm.ac.uk?package=simulist&version=0.5.0" data-mini-rdoc="simulist::pratik.gupte@lshtm.ac.uk">pratik.gupte@lshtm.ac.uk</a> (<a href="https://orcid.org/0000-0001-5294-7819">ORCID</a>) [contributor, reviewer]</li>
<li>Adam Kucharski <a href="/link/adam.kucharski%40lshtm.ac.uk?package=simulist&version=0.5.0" data-mini-rdoc="simulist::adam.kucharski@lshtm.ac.uk">adam.kucharski@lshtm.ac.uk</a> (<a href="https://orcid.org/0000-0001-8814-9421">ORCID</a>) [reviewer]</li>
<li>Chris Hartgerink <a href="/link/chris%40data.org?package=simulist&version=0.5.0" data-mini-rdoc="simulist::chris@data.org">chris@data.org</a> (<a href="https://orcid.org/0000-0003-1050-6809">ORCID</a>) [reviewer]</li>
<li>Sebastian Funk <a href="/link/sebastian.funk%40lshtm.ac.uk?package=simulist&version=0.5.0" data-mini-rdoc="simulist::sebastian.funk@lshtm.ac.uk">sebastian.funk@lshtm.ac.uk</a> (<a href="https://orcid.org/0000-0002-2842-3406">ORCID</a>) [contributor]</li>
<li>London School of Hygiene and Tropical Medicine, LSHTM (00a0jsq62) [copyright holder]</li>
</ul>

Author

simulist: Simulate Disease Outbreak Line List and Contacts Data — simulist-package

Maintainer: Joshua W. Lambert <a href='mailto:joshua.lambert@lshtm.ac.uk'>joshua.lambert@lshtm.ac.uk</a> (<a href='https://orcid.org/0000-0001-5218-3046'>ORCID</a>) [copyright holder]
Authors:<ul>
<li>Carmen Tamayo <a href='mailto:carmen.tamayo-cuartero@lshtm.ac.uk'>carmen.tamayo-cuartero@lshtm.ac.uk</a> (<a href='https://orcid.org/0000-0003-4184-2864'>ORCID</a>)</li>
</ul>

Other contributors:<ul>
<li>Hugo Gruson <a href='mailto:hugo@data.org'>hugo@data.org</a> (<a href='https://orcid.org/0000-0002-4094-1476'>ORCID</a>) [contributor, reviewer]</li>
<li>Pratik R. Gupte <a href='mailto:pratik.gupte@lshtm.ac.uk'>pratik.gupte@lshtm.ac.uk</a> (<a href='https://orcid.org/0000-0001-5294-7819'>ORCID</a>) [contributor, reviewer]</li>
<li>Adam Kucharski <a href='mailto:adam.kucharski@lshtm.ac.uk'>adam.kucharski@lshtm.ac.uk</a> (<a href='https://orcid.org/0000-0001-8814-9421'>ORCID</a>) [reviewer]</li>
<li>Chris Hartgerink <a href='mailto:chris@data.org'>chris@data.org</a> (<a href='https://orcid.org/0000-0003-1050-6809'>ORCID</a>) [reviewer]</li>
<li>Sebastian Funk <a href='mailto:sebastian.funk@lshtm.ac.uk'>sebastian.funk@lshtm.ac.uk</a> (<a href='https://orcid.org/0000-0002-2842-3406'>ORCID</a>) [contributor]</li>
<li>London School of Hygiene and Tropical Medicine, LSHTM (00a0jsq62) [copyright holder]</li>
</ul>

simulist: Simulate Disease Outbreak Line List and Contacts Data

simulist-package: simulist: Simulate Disease Outbreak Line List and Contacts Data

Description

Arguments

Author

See Also