sjSDM (version 1.0.6)

plot.sjSDM: Coefficients plot

Description

Plotting coefficients returned by sjSDM model. This function only for model fitted by linear, fitted by DNN is not yet supported.

Usage

# S3 method for sjSDM
plot(x, ...)

Value

ggplot2 object for linear sjSDM model and nothing for DNN sjSDM model.

Arguments

x

a model fitted by sjSDM

...

Additional arguments to pass to plotsjSDMcoef.

Author

CAI Wang

See Also

plotsjSDMcoef

Examples

if (FALSE) {
library(sjSDM)
# simulate community:
com = simulate_SDM(env = 6L, species = 7L, sites = 100L)

# fit model:
model = sjSDM(Y = com$response,env = com$env_weights, iter = 2L, se = TRUE,
              verbose = FALSE) 

# normal plot
plot(model)

# colored by groups
species=c("sp1","sp2","sp3","sp4","sp5","sp6","sp7")
group=c("mammal","bird","fish","fish","mammal","amphibian","amphibian")
group = data.frame(species=species,group=group)

plot(model,group=group)
}